Best Gluten Free Low Carb Keto Shepherd’s Pie Recipe
These Mini Low Carb Shepherd’s Pie are made in a muffin pan for perfectly portioned servings. These individual keto shepherd’s pie are a classic comfort food for whole family.

What is in a Traditional Shepherd’s Pie Recipe?
An original recipe for a traditional shepherd’s pie protein source is ground lamb, with a vegetable mixture, and topped with mashed potatoes. If you’re following a keto diet or low carb diet, it would be too high in carbs to enjoy.
I’m not a fan of lamb, so I used ground beef so technically it isn’t a shepherd’s pie, it’s a cottage pie.
Our low carb shepherd’s pie recipe has just 4 grams net carbs and total 8 g carbs with the pie crust. Nutrition info is below if you decide no pie crust on the bottom of your baking dish.

Can I Skip the Pie Crust?
With a fabulously flaky crust, filled with a scrumptious ground meat mixture and topped with a buttery creamy mashed cauliflower, these little shepherd’s pies will be a complete meal for the entire family.
It’s a great option for meal prep to make ahead and heat up for easy lunches!
โYou could easily make this recipe in a standard pie plate and forgo having a bottom crust all together if you’re just feeling a bit lazy.
Some days I get that way as well, but the little extra effort for the bottom crust is worth every delicious bite when you’re family doesn’t complain about eating cauliflower.
Or if you want to lower the carb count, you can skip adding the pie crust.

Nutritional Information without crust
The recipe card is below with all ingredients, instructions and nutrition with the crust, but if you decide you don’t want the crust, here are the macros for you.
โCalories 218
Total Carbs 2 g
Protein 12 g
Dietary Fiber 1 g
Fat 18 g
Net Carbs 1 g

Low-Carb Shepherd’s Pie
Once I made my low carb coconut flour pie crust, I’ve been creating recipes all around it. It’s such an amazing crust that really resembles a traditional white flour pie crust.
I’ve used it for sweet pies, like my Lemon Cream pie as well as savory pies like my Cheesy Italian sausage Quiche.
I’ve also enjoyed these left over for lunch the next day. I simply just reheat in the microwave for about a minute. You could just reheat in a toaster oven as well for about 5-8 minutes.
One is sufficient with a side salad but at just 4 crabs per serving, you could enjoy more than one if you so desire.
My hubby and kids really loved these. The oldest teen wasn’t crazy about the cauliflower, he’d rather have mashed potato, but otherwise he ate these anyway.
For a 15 year old who’s eating me out of the house and who prefers not to cook anything himself, he shouldn’t be complaining one bit.

Can I swap the ground meat?
Yes, you can swap out the ground beef for ground lamb or ground turkey or ground chicken if you like.
โHow can I make this one large Cauliflower Shepherd’s Pie?
You can replace the muffin pan that I used to make individual mini shepherds pie and use a 9 inch cast iron skillet instead.
You could also use a 9 by 13 large casserole dish.
โYou can use any pie dough you want, but the nutrition info is calculated with my coconut flour pie crust.
I have a brand new non stick muffin pan, and once cooled for about 15 minutes, these popped right out using a knife to loosen around the edges.
If you don’t have a new muffin pan, try using silicone muffin cups so these won’t stick.

How to Store Healthy Shepherd’s Pie
Store leftover keto cottage pie in an airtight container in the fridge for up to 3 days.
โCan I freeze this Shepherd’s Pie?
Yes, you can freeze our low carb version in an airtight container in the freezer for 2-3 months.

How to Reheat
Thaw the night before you want to reheat this shepherds pie. Preheat your oven to 350 degrees F and cover pie with aluminum foil.
Bake for 20-30 minutes. You could also microwave individual pieces for busy weeknights.

Low Carb Side Dishes to Serve
Broccoli Tots
Keto Shepherd’s Pie Recipe
Mini Keto Low Carb Shepherd’s Pie
Ingredients
- 1 My Easy Keto Pie Crust recipe unbaked
- 1 tbsp coconut oil or olive oil
- 1 tsp minced garlic or garlic powder
- 1/2 cup chopped onion
- 1 1/2 lb. ground beef
- 1/4 cup beef broth or chicken broth
- 1 tbsp tomato paste
- 1 tbsp red wine vinegar
- 1/4 tsp salt
- 1/8 tsp black pepper
- 1 cup shredded cheddar cheese or vegan cheese for dairy free
- 2 cups mashed cooked cauliflower (I steamed 1 small head, cauliflower florets were about 4 cups total)
- 1/4 tsp salt
- 1/4 tsp black pepper
- 2 tbsp butter or coconut oil
- optional topping: fresh parsley and dried paprika
Instructions
- Preheat oven to 400 degrees F.
- Once your pie dough is ready, separate it into 12 balls.
- Spread the dough with fingers on the bottom and half way up sides of each cup of 12 capacity muffin pan.
- Bake for 10 minutes. Set aside.
- While crust is baking, make filling by heating the oil in a large skillet over medium heat, add garlic and onion and cook until onion is softened.
- Add the ground beef and cook until browned.
- Stir in the broth, tomato paste, vinegar and salt and pepper.
- Once the pie crust is done, evenly add the ground beef mixture into each muffin cup.
- Top each evenly with shredded cheddar.
- Before piping the creamy cauliflower mash onto each muffin cup, stir the mashed cauliflower with salt, pepper and butter. Taste and adjust seasonings if needed.
- Add mashed cauliflower topping to a piping bag and pipe over each muffin.
- Bake for 5 more minutes to melt the cheddar cheese to golden brown.
- You can also broil for 2-3 minutes, watching carefully, just to brown the mashed cauliflower a bit.
- Sprinkle over optional toppings before serving if desired.
Video

This all looks delicious, but I’m confused.
First it says that you’re filling them with a ground beef mixture, but then it says that each one contains 4 crabs. Now, crab in this does sound delightful, but I don’t think you could fit 4 of them in each muffin tin! ๐
Its not a shepherd pie. Shepherds pie is made with lamb because that is what a shepherd takes care of. This is a COTTAGE pie!
This is cottage pot pie not shepherdโs. Shepherdโs is made with lamb not beef. look good though.
Made this tonight, flavor was outstanding! I had trouble getting them out of the muffin pan without a couple falling apart. They were a beautiful site at dinner and for once what I made actually looked like the picture in the recipe!
Horray so glad you liked the recipe!
The net carbs does NOT include the crust, correct?
Thanks so much!
Really clever idea with individual servings. I’ve never thought Shepherd’s pie could be a party food! Do you think wonton wrappers or circles cut out from tortillas would be a good replacement for pastry pie crust? I am thinking of some lighter modification.
Right maybe a low carb tortilla would work to lower the calories a bit.
I would not freeze the cooked cauliflower cause it does get mushy ad very strong tasting. I would maybe make a day or two and then warm up but frozen cook cauliflower is Yucky
Can they be frozen and if so for how long. Looks like a great recipe and I hope to try it soon. Thank you for all your good work.
Hi Eileen that’s a good question and I haven’t tried freezing them since we’ve eaten them pretty quickly. But I do think they would freeze fine, maybe just assemble and wait to bake until ready to eat for dinner.
How many is equal to one serving that matches your nutrition facts (1, 2, etc,?)
Nutrition info is for one mini pot pie.